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Related Publications
Journal articles
J. Biomed. Opt.
Motion characterization scheme to minimize motion artifacts in intravital microscopy
Lee, S.,
Courties, G.,
Nahrendorf, M.,
Weissleder, R.,
and Vinegoni#, C.
Respiratory- and cardiac-induced motion artifacts pose a major challenge for in vivo optical imaging, limiting the temporal and spatial imaging resolution in fluorescence laser scanning microscopy. Here, we present an imaging platform developed for in vivo characterization of physiologically induced axial motion. The motion characterization system can be straightforwardly implemented on any conventional laser scanning microscope and can be used to evaluate the effectiveness of different motion stabilization schemes. This method is particularly useful to improve the design of novel tissue stabilizers and to facilitate stabilizer positioning in real time, therefore facilitating optimal tissue immobilization and minimizing motion induced artifacts. (C) 2017 Society of Photo-Optical Instrumentation Engineers (SPIE).
28253383
PMC5333764
10.1117/1.Jbo.22.3.036005
Nat. Commun.
Tyrosine kinase-mediated axial motility of basal cells revealed by intravital imaging
Roy, J.,
Kim, B.,
Hill, E.,
Visconti, P.,
Krapf, D.,
Vinegoni, C.,
Weissleder, R.,
Brown, D.,
and Breton#, S.
Epithelial cells are generally considered to be static relative to their neighbours. Basal cells in pseudostratified epithelia display a single long cytoplasmic process that can cross the tight junction barrier to reach the lumen. Using in vivo microscopy to visualize the epididymis, a model system for the study of pseudostratified epithelia, we report here the surprising discovery that these basal cell projections-which we call axiopodia-periodically extend and retract over time. We found that axiopodia extensions and retractions follow an oscillatory pattern. This movement, which we refer to as periodic axial motility (PAM), is controlled by c-Src and MEK1/2-ERK1/2. Therapeutic inhibition of tyrosine kinase activity induces a retraction of these projections. Such unexpected cell motility may reflect a novel mechanism by which specialized epithelial cells sample the luminal environment.
26868824
PMC4754344
10.1038/ncomms10666
Nat. Protoc.
Imaging the beating heart in the mouse using intravital microscopy techniques
Vinegoni#†, C.,
Aguirre†, A. D.,
Lee, S.,
and Weissleder, R.
Real-time microscopic imaging of moving organs at single-cell resolution represents a major challenge in studying complex biology in living systems. Motion of the tissue from the cardiac and respiratory cycles severely limits intravital microscopy by compromising ultimate spatial and temporal imaging resolution. However, significant recent advances have enabled single-cell resolution imaging to be achieved in vivo. In this protocol, we describe experimental procedures for intravital microscopy based on a combination of thoracic surgery, tissue stabilizers and acquisition gating methods, which enable imaging at the single-cell level in the beating heart in the mouse. Setup of the model is typically completed in 1 h, which allows 2 h or more of continuous cardiac imaging. This protocol can be readily adapted for the imaging of other moving organs, and it will therefore broadly facilitate in vivo high-resolution microscopy studies.
26492138
PMC5380003
10.1038/nprot.2015.119
Front. Physiol.
New techniques for motion-artifact-free in vivo cardiac microscopy
Vinegoni#†, C.,
Lee†, S.,
Aguirre, A. D.,
and Weissleder, R.
Intravital imaging microscopy (i.e., imaging in live animals at microscopic resolution) has become an indispensable tool for studying the cellular micro-dynamics in cancer, immunology and neurobiology. High spatial and temporal resolution, combined with large penetration depth and multi-reporter visualization capability make fluorescence intravital microscopy compelling for heart imaging. However, tissue motion caused by cardiac contraction and respiration critically limits its use. As a result, in vitro cell preparations or non-contracting explanted heart models are more commonly employed. Unfortunately, these approaches fall short of understanding the more complex host physiology that may be dynamic and occur over longer periods of time. In this review, we report on novel technologies, which have been recently developed by our group and others, aimed at overcoming motion-induced artifacts and capable of providing in vivo subcellular resolution imaging in the beating mouse heart. The methods are based on mechanical stabilization, image processing algorithms, gated/triggered acquisition schemes or a combination of both. We expect that in the immediate future all these methodologies will have considerable applications in expanding our understanding of the cardiac biology, elucidating cardiomyocyte function and interactions within the organism in vivo, and ultimately improving the treatment of cardiac diseases.
26029116
PMC4428079
10.3389/fphys.2015.00147
P.N.A.S.
Intravital imaging of cardiac function at the single-cell level
Aguirre, A. D.,
Vinegoni#, C.,
Sebas, M.,
and Weissleder#, R.
Proceedings of the National Academy of Sciences of the United States of America 2014
Knowledge of cardiomyocyte biology is limited by the lack of methods to interrogate single-cell physiology in vivo. Here we show that contracting myocytes can indeed be imaged with optical microscopy at high temporal and spatial resolution in the beating murine heart, allowing visualization of individual sarcomeres and measurement of the single cardiomyocyte contractile cycle. Collectively, this has been enabled by efficient tissue stabilization, a prospective real-time cardiac gating approach, an image processing algorithm for motion-artifact-free imaging throughout the cardiac cycle, and a fluorescent membrane staining protocol. Quantification of cardiomyocyte contractile function in vivo opens many possibilities for investigating myocardial disease and therapeutic intervention at the cellular level.
25053815
PMC4128110
10.1073/pnas.1401316111
Sci. Rep.
Automated motion artifact removal for intravital microscopy, without a priori information
Lee†, S.,
Vinegoni#†, C.,
Sebas, M.,
and Weissleder, R.
Intravital fluorescence microscopy, through extended penetration depth and imaging resolution, provides the ability to image at cellular and subcellular resolution in live animals, presenting an opportunity for new insights into in vivo biology. Unfortunately, physiological induced motion components due to respiration and cardiac activity are major sources of image artifacts and impose severe limitations on the effective imaging resolution that can be ultimately achieved in vivo. Here we present a novel imaging methodology capable of automatically removing motion artifacts during intravital microscopy imaging of organs and orthotopic tumors. The method is universally applicable to different laser scanning modalities including confocal and multiphoton microscopy, and offers artifact free reconstructions independent of the physiological motion source and imaged organ. The methodology, which is based on raw data acquisition followed by image processing, is here demonstrated for both cardiac and respiratory motion compensation in mice heart, kidney, liver, pancreas and dorsal window chamber.
24676021
PMC3968488
10.1038/srep04507
IEEE J.S.T.Q.E.
Advanced Motion Compensation Methods for Intravital Optical Microscopy
Vinegoni#†, C.,
Lee†, S.,
Fumene Feruglio, P.,
and Weissleder, R.
Ieee Journal of Selected Topics in Quantum Electronics 2014
Intravital microscopy has emerged in the recent decade as an indispensible imaging modality for the study of the microdynamics of biological processes in live animals. Technical advancements in imaging techniques and hardware components, combined with the development of novel targeted probes and new mice models, have enabled us to address long-standing questions in several biology areas such as oncology, cell biology, immunology, and neuroscience. As the instrument resolution has increased, physiological motion activities have become a major obstacle that prevents imaging live animals at resolutions analogue to the ones obtained in vitro. Motion compensation techniques aim at reducing this gap and can effectively increase the in vivo resolution. This paper provides a technical review of some of the latest developments in motion compensation methods, providing organ specific solutions.
24273405
PMC3832946
10.1109/jstqe.2013.2279314
Biomed. Opt. Exp.
Sequential average segmented microscopy for high signal-to-noise ratio motion-artifact-free in vivo heart imaging
Vinegoni#†, C.,
Lee†, S.,
Fumene Feruglio, P.,
Marzola, P.,
Nahrendorf, M.,
and Weissleder, R.
In vivo imaging is often severely compromised by cardiovascular and respiratory motion. Highly successful motion compensation techniques have been developed for clinical imaging (e.g. magnetic resonance imaging) but the use of more advanced techniques for intravital microscopy is largely unexplored. Here, we implement a sequential cardiorespiratory gating scheme (SCG) for averaged microscopy. We show that SCG is very efficient in eliminating motion artifacts, is highly practical, enables high signal-to-noise ratio (SNR) in vivo imaging, and yields large field of views. The technique is particularly useful for high-speed data acquisition or for imaging scenarios where the fluorescence signal is not significantly above noise or background levels. (c) 2013 Optical Society of America
24156067
PMC3799669
10.1364/boe.4.002095
Nat. Commun.
Real-time in vivo imaging of the beating mouse heart at microscopic resolution
Lee†, S.,
Vinegoni#†, C.,
Fumene Feruglio, P.,
Fexon, L.,
Gorbatov, R.,
Pivoravov, M.,
Sbarbati, A.,
Nahrendorf, M.,
and Weissleder, R.
Real-time imaging of moving organs and tissues at microscopic resolutions represents a major challenge in studying the complex biology of live animals. Here we present a technique based on a novel stabilizer setup combined with a gating acquisition algorithm for the imaging of a beating murine heart at the single-cell level. The method allows serial in vivo fluorescence imaging of the beating heart in live mice in both confocal and nonlinear modes over the course of several hours. We demonstrate the utility of this technique for in vivo optical sectioning and dual-channel time-lapse fluorescence imaging of cardiac ischaemia. The generic method could be adapted to other moving organs and thus broadly facilitate in vivo microscopic investigations.
22968700
PMC3622400
10.1038/ncomms2060
J. Biomed. Opt.
Improved intravital microscopy via synchronization of respiration and holder stabilization
Lee†, S.,
Vinegoni#†, C.,
Fumene Feruglio, P.,
and Weissleder, R.
A major challenge in high-resolution intravital confocal and multiphoton microscopy is physiologic tissue movement during image acquisition. Of the various physiological sources of movement, respiration has arguably the largest and most wide-ranging effect. We describe a technique for achieving stabilized microscopy imaging using a dual strategy. First, we designed a mechanical stabilizer for constraining physical motion; this served to simultaneously increase the in-focus range over which data can be acquired as well as increase the reproducibility of imaging a certain position within each confocal imaging plane. Second, by implementing a retrospective breathing-gated imaging modality, we performed selective image extraction gated to a particular phase of the respiratory cycle. Thanks to the high reproducibility in position, all gated images presented a high degree of correlation over time. The images obtained using this technique not only showed significant improvements over images acquired without the stabilizer, but also demonstrated accurate in vivo imaging during longitudinal studies. The described methodology is easy to implement with any commercial imaging system, as are used by most biological imaging laboratories, and can be used for both confocal and multiphoton laser scanning microscopy. c 2012 Society of Photo-Optical Instrumentation Engineers (SPIE). [DOI: 10.1117/1.JBO.17.9.096018]
23085919
PMC3449295
10.1117/1.Jbo.17.9.096018
Intravital
Motion compensation using a suctioning stabilizer for intravital microscopy
Vinegoni#†, C.,
Lee†, S.,
Gorbatov, R.,
and Weissleder, R.
Motion artifacts continue to present a major challenge to single cell imaging in cardiothoracic organs such as the beating
heart, blood vessels or lung. In this study, we present a new water-immersion suctioning stabilizer that enables minimally
invasive intravital fluorescence microscopy using water-based stick objectives. The stabilizer works by reducing major
motion excursions and can be used in conjunction with both prospective or retrospective gating approaches. We show
that the new approach offers cellular resolution in the beating murine heart without perturbing normal physiology.
In addition, because this technique allows multiple areas to be easily probed, it offers the opportunity for wide area
coverage at high resolution.